gEVAL Genome Browser Plugin
Genome Evaluation & Assessment Browser
Welcome to the gEVAL genome browser plugin page.
This site holds the code to extend the ensembl web code to display the gEVAL browser.
What is the gEVAL genome browser?
The gEVAL Browser is a web based tool that allows for the evaluation of genome assemblies.
The strength of this browser is the ability to navigate an up to date assembly and identify problematic regions and assist in strategizing potential solutions for these issues.
This facilitates the improvement of overall assemblies to a “gold” standard for release as reference genomes.
Overview Tutorial of gEVAL (Prezi presentation)
For news, updates and potential web service disruption announcements please visit:
Contents
Authors
gEVAL was created and maintained by the Genome Reference Informatics Team at the Wellcome Trust Sanger Institute. For more information about the team please visit:
How to Cite
gEVAL - A web based browser for evaluating genome assemblies William Chow, Kim Brugger, Mario Caccamo, Ian Sealy, James Torrance, Kerstin Howe bioRxiv doi: http://dx.doi.org/10.1101/038638
Usage of Code Policy
Copyright (c) 2014 by Genome Research Limited All rights reserved.
Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:
Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer.
Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.
Neither the name of the Wellcome Trust Sanger Institute, Genome Research Limited, Genome Reference Consortium nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL GENOME RESEARCH LIMITIED BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
Support or Contact
Email: geval-help@sanger.ac.uk